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publications:publi:fmjlvul18ngsc [2020/05/07 20:44] (current)
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 +<p> <h1> FmJlvUl18NGSC</​h1>​
 + <​p><​span class="​BibAuthor">​F. Mora-Marquez,​ J.L. Vazquez-Poletti,​ U. Lopez de Heredia</​span>​. <span class="​BibJournalTitle">​NGScloud:​ RNA-seq analysis of non-model species using cloud computing</​span>​. <span class="​BibJournalName">​Bioinformatics</​span>,​ 34(19):​3405-3407,​ 2018.</​P><​p>​
 +<a name="​abstract"></​a><​h2>​ Abstract ​ </h2> <​P> ​
 +RNA-seq analysis usually requires large computing infrastructures. NGScloud is a bioinformatic system developed to analyze RNA-seq data using the cloud computing services of Amazon that permit the access to ad hoc computing infrastructure scaled according to the complexity of the experiment, so its costs and times can be optimized. The application provides a user-friendly front-end to operate Amazon'​s hardware resources, and to control a workflow of RNA-seq analysis oriented to non-model species, incorporating the cluster concept, which allows parallel runs of common RNA-seq analysis programs in several virtual machines for faster analysis<​p>​
 + <a name="​keyword"></​a>​ <​h2>​Keywords </h2> <p> [ <a href="/​doku.php?​id=publications:​keyword:​tin2015-65469-p">​Tin2015-65469-p</​a>​ ] [ <a href="/​doku.php?​id=publications:​keyword:​cloud">​Cloud</​a>​ ] 
 +<a name="​contact"></​a><​h2>​ Contact ​ </h2> <​P> ​
 +<a href="​mailto:​jlvazquez@fdi.ucm.es">​Jose Luis  Vazquez-Poletti</​a> ​ <a href="/​jlvazquez">​ <img src="/​lib/​exe/​fetch.php?​w=&​h=&​cache=cache&​media=html_icon.png"​ align=top border=0 alt =""></​a><​br> ​
 +<a name="​bib"></​a><​h2>​ BibTex Reference ​ </h2> <​P> ​
 +@article{FmJlvUl18NGSC,​ <​br>&​nbsp;&​nbsp;&​nbsp;​Author = {Mora-Marquez,​ F. and Vazquez-Poletti,​ J.L. and Lopez de Heredia, U.},<​br>&​nbsp;&​nbsp;&​nbsp;​Title = {NGScloud: RNA-seq analysis of non-model species using cloud computing},<​br>&​nbsp;&​nbsp;&​nbsp;​Journal = {Bioinformatics},<​br>&​nbsp;&​nbsp;&​nbsp;​Volume = {34},<​br>&​nbsp;&​nbsp;&​nbsp;​Number = {19},<​br>&​nbsp;&​nbsp;&​nbsp;​Pages = {3405--3407},<​br>&​nbsp;&​nbsp;&​nbsp;​Publisher = {Oxford University Press},<​br>&​nbsp;&​nbsp;&​nbsp;​Year = {2018}<​br>​} <​br><​p>​
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