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publications:publi:vahml07ibergrid [2019/04/25 08:49]
publications:publi:vahml07ibergrid [2019/09/12 08:51] (current)
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 +<p> <h1> VaHML07ibergrid</​h1>​
 + <​p><​span class="​BibAuthor">​J.L. Vazquez-Poletti,​ E. Huedo, R.S. Montero, I.M. Llorente</​span>​. <span class="​BibInProceedingsTitle">​Advanced Strategies for Efficient Workflow Management in a Protein Clustering Application with GridWay</​span>​. In <span class="​BibInProceedingsBooktitle">​1st Iberian Grid Infrastructure Conference</​span>,​ Pages 199-207, 2007.</​P><​p>​
 +<a name="​abstract"></​a><​h2>​ Abstract ​ </h2> <​P> ​
 +Bioinformatics is demanding the computational power offered by Grid Computing. On the other hand, a workflow management system is needed for the complex applications pertaining to this research area. In a precedent contribution,​ a Bioinformatics application which perforns protein clustering was ported to the Grid using the GridWay metascheduler on the EGEE production infrastructure. The reason for the Grid approach is that a single machine is subject to memory restrictions and the input database size grows everyday. Nevertheless,​ execution times obtained on the Grid were higher due to the overheads imposed by its highly dynamic, heterogeneous and faulty environment. In this paper we introduce some optimization strategies that will shorten execution times in the considered workflow<​p>​
 + <a name="​keyword"></​a>​ <​h2>​Keywords </h2> <p> [ <a href="/​doku.php?​id=publications:​keyword:​grid">​Grid</​a>​ ] [ <a href="/​doku.php?​id=publications:​keyword:​gridway">​ Gridway</​a>​ ] [ <a href="/​doku.php?​id=publications:​keyword:​tin2006-02806">​Tin2006-02806</​a>​ ] [ <a href="/​doku.php?​id=publications:​keyword:​egee">​ Egee</​a>​ ] 
 +<a name="​contact"></​a><​h2>​ Contact ​ </h2> <​P> ​
 +<a href="​mailto:​jlvazquez@fdi.ucm.es">​Jose Luis  Vazquez-Poletti</​a> ​ <a href="/​jlvazquez">​ <img src="/​lib/​exe/​fetch.php?​w=&​h=&​cache=cache&​media=html_icon.png"​ align=top border=0 alt =""></​a><​br> ​
 +<a href="​mailto:​ehuedo@fdi.ucm.es">​Eduardo ​ Huedo</​a> ​ <a href="/​ehuedo">​ <img src="/​lib/​exe/​fetch.php?​w=&​h=&​cache=cache&​media=html_icon.png"​ align=top border=0 alt =""></​a><​br> ​
 +<a href="​mailto:​rubensm@dacya.ucm.es">​Ruben S.  Montero</​a> ​ <a href="/​doku.php?​id=people:​ruben">​ <img src="/​lib/​exe/​fetch.php?​w=&​h=&​cache=cache&​media=html_icon.png"​ align=top border=0 alt =""></​a><​br> ​
 +<a href="​mailto:​llorente@dacya.ucm.es">​Ignacio M.  Llorente</​a> ​ <a href="/​llorente">​ <img src="/​lib/​exe/​fetch.php?​w=&​h=&​cache=cache&​media=html_icon.png"​ align=top border=0 alt =""></​a><​br> ​
 +<a name="​bib"></​a><​h2>​ BibTex Reference ​ </h2> <​P> ​
 +@InProceedings{VaHML07ibergrid,​ <​br>&​nbsp;&​nbsp;&​nbsp;​Author = {Vazquez-Poletti,​ J.L. and Huedo, E. and Montero, R.S. and Llorente, I.M.},<​br>&​nbsp;&​nbsp;&​nbsp;​Title = {Advanced Strategies for Efficient Workflow Management in a Protein Clustering Application with GridWay},<​br>&​nbsp;&​nbsp;&​nbsp;​BookTitle = {1st Iberian Grid Infrastructure Conference},<​br>&​nbsp;&​nbsp;&​nbsp;​Pages = {199--207},<​br>&​nbsp;&​nbsp;&​nbsp;​Publisher = {CESGA},<​br>&​nbsp;&​nbsp;&​nbsp;​Year = {2007}<​br>​} <​br><​p>​
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